SNP Profiles of JA 9 /37 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC	AA
1._GC-08-071-1-93	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC	AA
2._GC-08-071-1-93	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC	AA
3._GC-08-071-1-93	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC	AA
4._JA_9_/37_[POU]	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
5._JA_9_/37_[POU]	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
6._JA_9_/37_[POU]	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
7._JA_9_/37_[POU]	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
8._JA_9_/37_[POU]	AA	TT	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
9._GC-08-071-1-93	AA	TT	AA	GG	AG	CT	CC	CT	CT	GG	TT	CT	CT	AA
10._JA_9_/37_[POU]	AA	TT	AA	_	_	_	_	CT	CT	GG	_	CT	_	_
11._GC-08-71-1-93	AA	_	AA	GG	GG	_	GG	GG	_	GG	AA	GG	GG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC	GG	AA
1._GC-08-071-1-93	CC	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC	GG	AA
2._GC-08-071-1-93	CC	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC	GG	AA
3._GC-08-071-1-93	CC	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC	GG	AA
4._JA_9_/37_[POU]	_	AA	_	_	CC	_	_	_	_	TT	AA	_	GG	AA
5._JA_9_/37_[POU]	_	AA	_	_	CC	_	_	_	_	TT	AA	_	GG	AA
6._JA_9_/37_[POU]	_	AA	_	_	CC	_	_	_	_	TT	AA	_	GG	AA
7._JA_9_/37_[POU]	_	AA	_	_	CC	_	_	_	_	TT	AA	_	GG	AA
8._JA_9_/37_[POU]	_	AA	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
9._GC-08-071-1-93	AC	AG	GG	CC	CC	CT	AA	TT	GG	AT	AA	CG	CG	AT
10._JA_9_/37_[POU]	_	AG	_	_	CC	_	_	_	_	AT	AA	_	CG	AT
11._GC-08-71-1-93	CC	AA	CC	_	CC	AA	GG	AA	GG	TT	AA	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA	CC	GG
1._GC-08-071-1-93	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA	CC	GG
2._GC-08-071-1-93	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA	CC	GG
3._GC-08-071-1-93	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA	CC	GG
4._JA_9_/37_[POU]	_	_	_	CC	_	GG	TT	_	_	AA	_	_	_	_
5._JA_9_/37_[POU]	_	_	_	CC	_	GG	TT	_	_	AA	_	_	_	_
6._JA_9_/37_[POU]	_	_	_	CC	_	GG	TT	_	_	AA	_	_	_	_
7._JA_9_/37_[POU]	_	_	_	CC	_	GG	TT	_	_	AA	_	_	_	_
8._JA_9_/37_[POU]	_	_	_	CC	_	AG	TT	_	_	AA	_	_	_	_
9._GC-08-071-1-93	TT	GT	AG	CC	CC	AG	GT	GT	TT	GG	CT	AG	CC	GT
10._JA_9_/37_[POU]	_	_	_	CC	_	AG	GT	_	_	GG	_	_	_	_
11._GC-08-71-1-93	AA	CC	AA	CC	CC	GG	AA	CC	AA	AA	AA	AA	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CC	AA	GG	CC	CC	GG	GG	TT	TT	CC	TT	TT	AA
1._GC-08-071-1-93	TT	CC	AA	GG	CC	CC	GG	GG	TT	TT	CC	TT	TT	AA
2._GC-08-071-1-93	TT	CC	AA	GG	CC	CC	GG	GG	TT	TT	CC	TT	TT	AA
3._GC-08-071-1-93	TT	CC	AA	GG	CC	CC	GG	GG	TT	TT	CC	TT	TT	AA
4._JA_9_/37_[POU]	_	CC	_	_	_	_	_	_	_	_	CC	TT	_	_
5._JA_9_/37_[POU]	_	CC	_	_	_	_	_	_	_	_	CC	TT	_	_
6._JA_9_/37_[POU]	_	CC	_	_	_	_	_	_	_	_	CC	TT	_	_
7._JA_9_/37_[POU]	_	CC	_	_	_	_	_	_	_	_	CC	TT	_	_
8._JA_9_/37_[POU]	_	CC	_	_	_	_	_	_	_	_	CT	TT	_	_
9._GC-08-071-1-93	TT	CC	AA	GG	CC	AC	AG	AG	GT	_	CT	CT	TT	AG
10._JA_9_/37_[POU]	_	CC	_	_	_	_	_	_	_	_	CT	CT	_	_
11._GC-08-71-1-93	_	GG	_	GG	GG	_	GG	GG	AA	AA	GG	AA	AA	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT	CC	GG
1._GC-08-071-1-93	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT	CC	GG
2._GC-08-071-1-93	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT	CC	GG
3._GC-08-071-1-93	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT	CC	GG
4._JA_9_/37_[POU]	CC	_	CC	AA	GG	_	CC	AA	TT	GG	_	_	_	GG
5._JA_9_/37_[POU]	CC	_	CC	AA	GG	_	CC	AA	TT	GG	_	_	_	GG
6._JA_9_/37_[POU]	CC	_	CC	AA	GG	_	CC	AA	TT	GG	_	_	_	GG
7._JA_9_/37_[POU]	CC	_	CC	AA	GG	_	CC	AA	TT	GG	_	_	_	GG
8._JA_9_/37_[POU]	CC	_	CC	AC	GG	_	CC	AG	TT	GG	_	_	_	AA
9._GC-08-071-1-93	CC	CT	CT	AC	CG	GG	AC	AG	GT	GT	AG	CT	CC	GG
10._JA_9_/37_[POU]	CC	_	CT	AC	CG	_	AC	AG	GT	GT	_	_	_	GG
11._GC-08-71-1-93	GG	AA	GG	AA	GG	GG	CC	AA	AA	CC	GG	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	TT	TT
1._GC-08-071-1-93	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	TT	TT
2._GC-08-071-1-93	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	TT	TT
3._GC-08-071-1-93	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	TT	TT
4._JA_9_/37_[POU]	TT	_	_	_	_	_	CC	GG	_	_	_	TT	TT	TT
5._JA_9_/37_[POU]	TT	_	_	_	_	_	CC	GG	_	_	_	TT	TT	TT
6._JA_9_/37_[POU]	TT	_	_	_	_	_	CC	GG	_	_	_	TT	TT	TT
7._JA_9_/37_[POU]	TT	_	_	_	_	_	CC	GG	_	_	_	TT	TT	TT
8._JA_9_/37_[POU]	TT	_	_	_	_	_	CC	GG	_	_	_	CT	TT	TT
9._GC-08-071-1-93	TT	AC	AG	AC	AA	AA	CC	GG	CC	AT	AC	TT	CT	CT
10._JA_9_/37_[POU]	TT	_	_	_	_	_	CC	GG	_	_	_	TT	CT	CT
11._GC-08-71-1-93	AA	AA	AA	CC	AA	_	CC	CC	GG	TT	AA	AA	AA	_

	85	86	87	88	89	90	91	92
_Input profile	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-071-1-93	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-08-071-1-93	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-071-1-93	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._JA_9_/37_[POU]	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
5._JA_9_/37_[POU]	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
6._JA_9_/37_[POU]	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
7._JA_9_/37_[POU]	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
8._JA_9_/37_[POU]	_	AA	_	CC	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-08-071-1-93	CC	AG	CT	CT	GT	CT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._JA_9_/37_[POU]	_	AG	_	CT	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-08-71-1-93	AA	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: JA_9_/37_[POU] GC-08-071-1-93

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

1._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

2._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

3._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

4._JA_9_/37_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 4 > FP

Dapeng Zhang, 2016

5._JA_9_/37_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 3 > FP

Dapeng Zhang, 2016

6._JA_9_/37_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 1 > FP

Dapeng Zhang, 2016

7._JA_9_/37_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._JA_9_/37_[POU]

84.6 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E394 T8

Dapeng Zhang, 2016

9._JA_9_/37_[POU] GC-08-071-1-93

70.3 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._JA_9_/37_[POU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._JA_9_/37_[POU] GC-08-71-1-93

46.2 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 93, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240